PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11604_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 637aa    MW: 70697.4 Da    PI: 6.7212
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11604_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.36.4e-392343722133
                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssa.. 70 
                                           +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++     ++  
  cra_locus_11604_iso_1_len_3615_ver_3 234 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELpaW--TPta 304
                                           79**************************************************************652..4422 PP

                                   TCP  71 .....seceaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                                s++e+e+ ++++++++++++++++++++ + +++  + ++++ s++k  ++   +++e++++ 
  cra_locus_11604_iso_1_len_3615_ver_3 305 gtlvnSNFEQEQAQKQDAQNQQNAHQSQQQQQQLNVQHTDLMGSVSAGSSSKRAMTMLRNENEQQSMH 372
                                           43432444555555555555555666666667777777777777777555555555444444433333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-34234351IPR005333Transcription factor, TCP
PROSITE profilePS5136934.295236294IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MELGRLNGRA FWERQISELW QKEHNKKEEE SSSEETRTSA AAEEEAPLRR KSLLPNQKLE  60
EQEKHSLKGL SLDPHRHQHH RFPNQIPFSR NVEEEQALEE EEEQEQQTGI FAAAPHHQHR  120
PQPHQSQELF QQLYARLETS AAEAAGGVGV PPLPQQPQPP KKRSYFPSSS TNPQNQESEH  180
ARLGEKMGES FHHQHQLQQQ PQQQLRQSSS SRLGLRHTGG EIVEVQGGHI VRSTGRKDRH  240
SKVCTAKGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKKAKAA IDELAELPAW  300
TPTAGTLVNS NFEQEQAQKQ DAQNQQNAHQ SQQQQQQLNV QHTDLMGSVS AGSSSKRAMT  360
MLRNENEQQS MHHNSGNSSS SFLPPSLDSD SIADTIKSFF PMGASAEASS AMQFQSFPPP  420
DLLSRTSSQN QDLRLSLQSF QDPILLHHHQ GQQAQHHTTN NHTEQAQAQV QAHALFAGAT  480
QMGFDASSWG EHQQQSAEIG RFQRLASSWH AAGGDGQPSG GAVTGGYLFN SQPAPQPLLQ  540
QLFGQNQFFS QRGPLQSSNT PSVRAWMDPS AITIASADHI QNQHHAAVLP IYPSGIGFAS  600
GVGGFPGFHV PARIQGEEEE HDGLSDKPSS ASSDSRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_011082738.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-102TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0M4MCU81e-179A0A0M4MCU8_9LAMI; TCP transcription factor CIN2A
STRINGPGSC0003DMT4000322681e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349